Scaffold Ga0315278_10044091

Overview

Basic Information

• Taxon OID: 3300031997
• Scaffold ID: Ga0315278_10044091
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4352
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098523	Metagenome	103	N
F098576	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315278_100440912	F098523	AGGGGG	VDLDKLKDALQKARIAFSERLVPHANPTTTCLVVQRVGYALSVTPTLYYRGPVVEIRPSGGPRISFISNKDPAELVAVMDTFVQVRKWAARLQPKWATRQLALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLIQLHQENTPKRSWESFVEDWNCQYSASFGHELALSASYIYAWNGMRFLMDGDELSMDVWGPVFSAAFPEAIRLLESIQAVLGKTVKGRGNEGGPPGEAVPV
Ga0315278_100440914	F098576	N/A	MTLCIQPQSIAHQRLGCGAGPQETLVFLRRVEVPVPAPVEPLQTKGVSNPRHFVVTHSHRHGVTTGLVIGQEGQRKPTPTEAIKLLQLDFEPDREEFVEATEVAPVFLSKPRRNLKVTGGERARLIAQWAGRLYDMTASWQGPIGMQLAYLFAAMARGSHVALKRHSALVRLLRQEGVPTSDPIWKYIRIEE