NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308176_10394321

Scaffold Ga0308176_10394321


Overview

Basic Information
Taxon OID3300031996 Open in IMG/M
Scaffold IDGa0308176_10394321 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1380
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007126Metagenome / Metatranscriptome357Y
F029856Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0308176_103943211F029856N/AETSARLVWLADKGPDAGIHVVAWTDGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGLLSMNGKRSPA
Ga0308176_103943213F007126AGGAGMAGVVNDIEALAEFRAHLMRFNHDLAENFATIQGHWRELGEIWRDDMYRLFGEALDEVTPGIATYL

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