Scaffold Ga0307409_100657757

Overview

Basic Information

• Taxon OID: 3300031995
• Scaffold ID: Ga0307409_100657757
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1042
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003356	Metagenome / Metatranscriptome	492	Y
F011968	Metagenome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307409_1006577572	F011968	AGGA	MLPAEGFELYRHKNAVQMTTQGWSGLYWARMNEAGDYEIRSVTREGEAHSVTGGIFPKEGFEEHYEKTSPSE
Ga0307409_1006577573	F003356	N/A	KDARRRPAHCRVRIYLPEDMRDAPVVICSEVPNNPGESIISSSEAIAAAVIRANELPTPLVWIEHWPKESTDGGEETFDLVVFSNYEVIERAPYLGETRVWIGEPTWKSLDRDTVEVLVGGKI