Scaffold Ga0307409_100605519

Overview

Basic Information

• Taxon OID: 3300031995
• Scaffold ID: Ga0307409_100605519
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1083
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006339	Metagenome	375	Y
F042552	Metagenome	158	N
F066519	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307409_1006055192	F006339	GGAGG	MHNDQSAQDARTLLVALSSNHPEARRASPFVGMDRPFSPSWADAEQAGLDRVRRDAAIRWLMDNNMLEREEEAENQRAKGKEPPDDDYVYGSVFRITDSGRELLKEIWEEQRQL
Ga0307409_1006055193	F042552	GAGG	MAQSCWKDNDTVQERREQLLEELRKAEQARELLRALEQNLSKEKSPDLAPHVRRLEQLAQSLPDDHMVRLVIESALGPSEYGNVSRARSAVEGEISTLQGALRYKAK
Ga0307409_1006055194	F066519	AGGAG	LSEEQQRQRVRELVRKQTGLDWPELQVGEIEKAMSSVTLFYWGTKEE