NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307409_100154409

Scaffold Ga0307409_100154409


Overview

Basic Information
Taxon OID3300031995 Open in IMG/M
Scaffold IDGa0307409_100154409 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026493Metagenome197Y
F072963Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0307409_1001544091F026493N/AAPTDDRIRETWDRLVLLLISRPRAGWEAEFEEITRREIQRLALPAVKTERDE
Ga0307409_1001544093F072963GGAGMTRTPTRPFDDRSMWRRLVGRSHPDAGGDHELFIWTVATRDAICGGEKPKRERREEPFRRQEASTSSAGERVPFNEYSDFEVLTDRALSMAESVAEPYGFLLTQVADCYAVVEGPLYNQQRRGATYRTLAAIGHTVAMSKAERVGWYRIAETIPLSQRHAGHILSRLKGQAA

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