Scaffold Ga0307409_100075019

Overview

Basic Information

• Taxon OID: 3300031995
• Scaffold ID: Ga0307409_100075019
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2706
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F012851	Metagenome	276	Y
F023050	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307409_1000750191	F023050	GAGG	MMSLRGWIKRLERRAREDLESFELLDGSIYYYDRLETYKELFLHACDLQLGKGEWPEPPEVYRKICEARDVAEVLERFKPEDPERAFVNLAELYDTDVLVNER
Ga0307409_1000750193	F012851	AGGGGG	LGKCSGITQAGMACKGIPIDDSEYCYAHHPGRVNERRRHGSKGGKRGGRGRPIAELASLRDENADIRRRLLEGELLPNVAAVAVQSINTDIRAVGAAMKAREQEELVERLRALEEGLEQNRGASSRWGA
Ga0307409_1000750196	F004425	GGTGG	VNSAQLLPAFRALYSRLPETYHLEPWELQDVLFSLGYADDLAGGAEIAAAVEVARSDWTQWRAA