NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310691_11119446

Scaffold Ga0310691_11119446


Overview

Basic Information
Taxon OID3300031994 Open in IMG/M
Scaffold IDGa0310691_11119446 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)818
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004857Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0310691_111194461F004857N/APVLEFNQILSEAAKRELPSFRGKRGYMKYRRSNGVKGIVPEYYLVASPALAADDGADDPINVLTKILLDKQDRLKEGRDILCDPLFTQVGIAHEVYDDENMIIMIFAREFVPDEPKFELPFGNITELKKAFDILDGDEKEVLDMKEIMETLDEMKFYKTDPTLYNIFKQLADREKCSWPKFAYQVNLRMTDRQSREGLRTIFDLFIDDPDKGTITFETFKKICNEVECGLSEEQLNDIFRIATSNGNEITFKEFEQYMSVPPEK
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