NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310694_10323232

Scaffold Ga0310694_10323232


Overview

Basic Information
Taxon OID3300031992 Open in IMG/M
Scaffold IDGa0310694_10323232 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1582
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026441Metagenome / Metatranscriptome198N

Sequences

Protein IDFamilyRBSSequence
Ga0310694_103232322F026441AGAAGMFEQNNVYIDYSENLFTFHKVDNEEKIIEIDLDNCEIKDRENGKDEDVENEIDSKTDLVTLSYFPLCISHCNITLCYEQDLPQVLSNELIVQFMNIYPIINNPSLICGYDSLGGGCIINHLHFEFLMLDDFGTEISVLPIEERPSNLLFETKLKYKDEKEISMFDGTTTLKVSEIKEPLICWKIECILNQENSGEISAMENLFQNSISHLVNLILTKLIDKEIPHNIVITNQGRTFYVIPRKFENKKHKINTCWNDLAGLITCKEQKTFDEIKEDEIDKFFKDEVSLESNNFQTLTQDIITQIDSVFEIKKY
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