Scaffold Ga0308403_1021100

Overview

Basic Information

• Taxon OID: 3300031980
• Scaffold ID: Ga0308403_1021100
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1509
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031016	Metagenome / Metatranscriptome	183	Y
F048124	Metagenome / Metatranscriptome	148	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308403_10211002	F048124	AGGAGG	MAHISIWRGYRHWNWDEENDYEVVTYDDAEEIGAVRFEDENGDIQYRIIRWCEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFVLRKAGVIQ
Ga0308403_10211003	F031016	GGAGG	MDTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGACWEEENSRGTHTVFYRTEDGKIVVHQVLWSRWENEATYAYVHVFPSLDGVNGAAAMFWRELRKAGLIPPRTVELGE
Ga0308403_10211004	F075805	AGGAGG	MSVRVWHGWRGVHNGKDISRWEWIEFDGEPLGSLVVEIDEDRTDERVFYQTTDGRIVVAEHRYGDWKKGGVDYGVVSVYGSIEDAALRGWRDDLVRVGAYDAPVRELDEWLSQYEEEE