NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1005366

Scaffold Ga0308403_1005366


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1005366 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3395
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049463Metagenome / Metatranscriptome146N
F068330Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10053661F049463N/ARKDFGSEYQKSSKTLTHQRTQELLADMLRVPVYILGKTPSLDDLNTFLAQFGCQTDLSLLRPVKVWANLEEDIINEADKVIAQFIQSDLESPVIVVILPPLVALAAALVARMKEKCPTLKVLVVHYRVEHEPHFLGFELFCG
Ga0308403_10053663F068330AGGAGMNDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGIMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSTYIVSMASRSPVNGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQIERRQKNNRYDYFDLIVWAVFGVIVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETMPKSGARLDEQFSTNGVANRQSVKM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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