NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1004097

Scaffold Ga0308403_1004097


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1004097 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3968
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F043176Metagenome / Metatranscriptome156Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10040973F016404GGAMTTEELLTDEARAAVLRALLMIALDEDVPASARVAAARLFLSQFDEQPNADQSVLVIVDEAAFVKTV
Ga0308403_10040974F010840AGGAGGVNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALAVIIGYVVSYHIPLSEVEAEAIARKYYRNCK
Ga0308403_10040975F051735AGGAGMFRDVVLINGPVPKDGVADYERVRIKARPLGRPYAWDNGRAWNSYVTNGGFILVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEKYASLAEARAGGRGWLIEYTLGIE
Ga0308403_10040976F006418AGGAGMPKRRSAPKPRPAREVVIEEGADYRLLYDRETRDYAVEYRGEPVGWRAFIEDARRLVEQLRYEEARRGAGKE
Ga0308403_10040977F043176AGGAGGMQNYRIWEGERTFLPGEDTSKFTIIEIIGEELGWFEDVIDGKTYYVYQTEGEVVINIVEQNYGIGEPSRGSIHRYSNLEEAAADGFEQALK
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