Scaffold Ga0308403

Basic Information
Taxon OID	3300031980 Open in IMG/M
Scaffold ID	Ga0308403_1001169 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031980 Open in IMG/M

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8402
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8402

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y
F012676	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308403_100116913	F004024	AGGA	MSSERDYLRQPSSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308403_100116914	F002978	GAG	MSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDAADPDSVALVRRAIATLRAAGADCSALPHPLPGTTPPGA
Ga0308403_100116915	F000642	GAGG	VQEISVALALCAVGAAIWYMRRREAGAGRVTGWLLLYDDVGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308403_10011695	F007172	AGGAGG	MSTTTLTTLQRRAFAAALRAAKRDAYCRAVGGFAIACLSDGTIDWFPLGQPPHRGGEPDRRATILGKWRWNHKRWSRIA
Ga0308403_10011696	F012676	GGA	MEPQTVVADSVERNDMNSIKLAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308403_10011699	F002372	AGGGGG	MPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVQANRQWERHSEFAMRVVETALQLVQEYRADPSLGGAEAWA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308403_1001169

Overview

Ecosystem & Geography

Associated Families

Sequences