Scaffold Ga0308403

Basic Information
Taxon OID	3300031980 Open in IMG/M
Scaffold ID	Ga0308403_1000745 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031980 Open in IMG/M

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11603
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11603

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308403_10007451	F000642	GAG	MQTISIALAVCACAAAIWYMRRRDAGAGRVTGWLLLYDDLGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWLDLLRVMGVVLPAVFAYFTWAQVASLQSLVAQILALVGGE
Ga0308403_100074514	F015735	GAGG	MVVYHHWSVEWHSRSDPPYGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGAGYEVVWRLSVVVDDADGDAPPDGAWSDDPLYRARRRLLRWIMRSQCPIPALADHFADEHFRASPGYFGLE
Ga0308403_100074516	F002795	GGAGG	MSTDGLVLRGMVASYREFISRKDGKTYRVATVFGDLMAGGTVLCQVDGYDVFVDSSYTRGEMVELPVRMQFLRDGSGRPVIKLYFDQGVR
Ga0308403_100074517	F008135	AGGAGG	MRAVIDPRTERLLVSAGTSIARVLDARQRHAVALALEVCRYIVAALPPDDELTFGDMVRLLRWFGEGFNRDAEGDDVD
Ga0308403_100074518	F002229	GGAGG	MVTLLTLDGVEDVDYVPSDLEIRASLDDCALYGMVLNGVTWMRLVSGAGWWTVVCDRRVMATLAAVGWCWVADGLGVRGYWSPALASIPAEVRALCGGCGGCVDDDDGGDED
Ga0308403_10007453	F000855	GAGG	MDWLEDFWSKVVGWWDQVSAGVHNGVIGWINSLVEIWNGWMDALLHPARAMPSSPQLRWIVDWLGDIADYTRLMYMLADYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308403_10007459	F007172	AGGAGG	MNTLERRTFAAALRAAKQSAYCRTVGGFVIARMTDGTIDWFPLGQPPHRSGEPDRRATILGKWRWNHKRWSRIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308403_1000745

Overview

Ecosystem & Geography

Associated Families

Sequences