Scaffold Ga0315914_1055236

Overview

Basic Information

• Taxon OID: 3300031967
• Scaffold ID: Ga0315914_1055236
• Source Dataset Name: Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 870
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002299	Metagenome	573	Y
F003802	Metagenome	467	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315914_10552361	F002299	AGG	VTRSRGRSLALGDSLAVSVATAKRLPSAKDSLLTPDALTSKAFSDGHMLLSINSYEISTT
Ga0315914_10552362	F003802	GGGGG	VKPASAEVRLAIDLEFIPYQPLCLLKNWTLRLPWVFQFIGSEVYNIVDKTFPLPLLLKEGYVWFRGRSLLLHEISGSRLRPILDR