Scaffold Ga0308420

Basic Information
Taxon OID	3300031966 Open in IMG/M
Scaffold ID	Ga0308420_1020163 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031966 Open in IMG/M

Scaffold ID

Ga0308420_1020163 Open in IMG/M

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2836
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2836

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308420_10201633	F002229	GGAGG	MVTLLTLDGVEEIDYVPSDAEIRASLDDPGLYGMVLGAVIWIRLSSGAGWWTVLFGKRLTVTLAPVGWCWVMDGLGARGYWSPALACVPVEVRALCGGYVEDEDEED
Ga0308420_10201634	F008135	AGGAGG	MRAMNDPRTERVLAEAGASIARVLDARQRHAVALALEVCWYIAAALPPDDELTFGDMVRLLRWFARGFNEDVEADDGDE
Ga0308420_10201635	F002795	GGAGG	MATNNRLVLRGMVAAYREFVSRKDGRLFRIITVFGDLVVGEVVLCVVDGYDVFVDSPGYSRGEMVELPARLQFARDGSGKPVVRLYVGEGVR
Ga0308420_10201636	F002372	AGGAG	MPTRKEDVLWSVVHQRSAHLRALLDGLDSIDVGVTYELDYYPYVVVELLRVRGDAPPLVLRSIYIQANRQWEYHSEFALRVIDAALHLVHEYRADPSLGGAEAVWT
Ga0308420_10201637	F015735	AGGCGG	MVVWHYWSVEWHPRDPPADLPRVVCIARRAVSDPFAGPGPFPPDIDRAVRYWNSVASGGARDHGAYEVAWRVAVVADDADGDAPPDGVWSDDPVYRARRRLLRWIMRSQCPLFADHFAVEHFRASPAYFGLLDSGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308420_1020163

Overview

Ecosystem & Geography

Associated Families

Sequences