Scaffold Ga0308420_1000462

Overview

Basic Information

• Taxon OID: 3300031966
• Scaffold ID: Ga0308420_1000462
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19869
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F016100	Metagenome / Metatranscriptome	249	Y
F072382	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308420_100046213	F007404	GGAGG	VDIIEILQLLAAGHAGLTAVDYVWNAVFGAIGAATAYLADTNGEVFLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFVAGVVAPTLLPLLIDKITVFVERRRK
Ga0308420_100046215	F072382	AGGAGG	MKTVYHTKDVWFPPFSIKIEPKPGTWFADVYVRYAENPGLDDKYNAYIGAANFLSATPIPAVDRRDVAKAIESLVFDYGLVDLVIYPTRDGWSVHITLCPELENQYLRGEGATPADAIRNSAPYPPPLRNV
Ga0308420_100046216	F016100	AGGAGG	MVVSVKIERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELLVGTHVPEPDWHRLGALVVALFRSFAVVDAEVWLTDTGIWVADALVDFGGVRRLRKGEGDTPLQAVIELITDIQRY
Ga0308420_100046219	F006252	GAGG	MRSFDEQAAFGLPYERLIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDGERPVAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFLDGLAIFDVLRTPSTVRYLRTRRGVLRKHREYDIRERTVRLETVHQRPRGSA
Ga0308420_100046222	F004307	AGGA	MFKELIKRDGEEERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVEDDDGNPLRVSKWVRKPARLSHPGKSGKVTNLYRVLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHITPARRTRQRKTKEDEDVPF
Ga0308420_100046223	F008499	GGA	MKTFRSKSEPRWKRKEREALKALQATFGRVGDPSLARLLTPTGRVGHLTRFGVDGFVGNNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPARTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308420_10004625	F002970	GGAG	MSSSSVTDIIELLAGLAVQYNSAVVPVQRLASQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEVDDLLLVRDVGMGRGVADTAAELVDYIEDYVAQLRFAWPTRGDVQLVNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSA
Ga0308420_10004626	F005302	AGGAGG	MSHSGVIAGLYAGNFAVEISTNNTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVDSARAYGTSNDGGTTFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGTNPTNLNPAS
Ga0308420_10004627	F004791	AGGAGG	MTKPAEIYDIDTIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKTVYERVLPQIFEPDEAVRSRVAGLVPAVDEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIAEEGNE