Scaffold Ga0326597_10001577

Overview

Basic Information

• Taxon OID: 3300031965
• Scaffold ID: Ga0326597_10001577
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36468
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000195	Metagenome / Metatranscriptome	1659	Y
F060690	Metagenome / Metatranscriptome	132	Y
F079737	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326597_100015771	F079737	N/A	MATKSQQLRQSFLASGAAAAIVLVALVAWFTGNGAKRILEQQADARGREFAAREAVLVTHYLNE
Ga0326597_1000157729	F000195	N/A	MDLNVTRQQYDAIRGAKHLPDVLKKVLDDARRDGDGHVLHLTYEEATALNELCSWNVHTDAAGAVTPDSRVYDDLVRAIMTHPEF
Ga0326597_1000157731	F060690	GGAG	VRALTRNTLLAVPLALVFFFALPRQGALGWDLLDDFTLAFAFTYVGYYVEVLLLKVPGIETGAGRLVRVLGWFAGGLWCYELGRWALLAYGRDTRALPPLVYGGFLFVALQLVLHSLKPRAAPPQRPA