Scaffold Ga0326597_10000388

Overview

Basic Information

• Taxon OID: 3300031965
• Scaffold ID: Ga0326597_10000388
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79818
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (82.80%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011461	Metagenome / Metatranscriptome	291	Y
F035214	Metagenome	172	Y
F084372	Metagenome / Metatranscriptome	112	N
F095143	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326597_1000038812	F011461	AGGAGG	MLVPRPVVYALLAGLLAGCSLYGTDYRLWHKANASNAELEDALSACGPESRVVSAEGSRDPRTYFEGPATPEQANANRLFQRCMVSRGWWALQPPL
Ga0326597_1000038816	F035214	AGGAGG	MRDAWFACTGIVFGWLMSKAWSDPGCQVGMVIFLITTAVLTLAFALAVVGHGRGPQDPGGDDDDERDQ
Ga0326597_1000038857	F084372	AGGGGG	MKARVQREDGTLETIELPQDAWQVLRLGSINCLVSAERTHSFDEEGYYLRTQPVGAGVKEAAPPEPGMGGMEPTLA
Ga0326597_1000038860	F095143	AGGAGG	MNHFIMGALAGALAMWYWGEDIRAYVDSRTRDVRDRAVQKLQIVEERAGDVLDRTKEHVSSTLQAGQDAIRPRVS