Scaffold Ga0315901_10565023

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10565023
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 872
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F012862	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_105650231	F000258	GGAGG	VTADYKLDAMLELRKYLWKELYTREIFNEEDYWSDNLNENIVPIIPVQQAAEMNQFLSWKKHIVYDKIGLSYEDNWLICCEQIMFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHSIWVADISPTAPSEELQGFFSAEVILEVKYSRIT
Ga0315901_105650232	F012862	N/A	RRRHMFVNKASVMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVRRPGGSASTNQFTLAHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM