NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10176030

Scaffold Ga0315901_10176030


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10176030 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1879
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007260Metagenome / Metatranscriptome354N
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N

Sequences

Protein IDFamilyRBSSequence
Ga0315901_101760301F010835AGGAMNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFTDPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTAEYNVLAIVAAFENILQPLFVDDNISDLNVGDSNPSGGFTAFFATPTDFGVNDTSERARTFSRSMRIFAAAN
Ga0315901_101760302F013879GGAGMTPTITVDTSRFDAAWKEYLPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAKELEGHITAAFQAAFDGSESKGIVVQ
Ga0315901_101760303F007260N/AVNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGKQLRIMSAKRDGSGAYYALELGAKTK
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