Scaffold Ga0315901_10134755

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10134755
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2228
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005389	Metagenome / Metatranscriptome	402	Y
F007113	Metagenome / Metatranscriptome	357	Y
F010916	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_101347551	F010916	AGAAG	MSISKQIHTDLLDMVSKHDYSYMMSDSHNVWESGMVYEKHIKAKIHALCAIHREDAEALYNEVKAVAGPDYTDYDSNGY
Ga0315901_101347552	F007113	N/A	MKLELTPEQLKTVEIALCELFNSDRWISGRDESEIDKIAERAGYLLNIIEQHNKKK
Ga0315901_101347558	F005389	N/A	AKRGNIYETVSNNIQKITRPSGTTSYRVRVTEDGVMYSQYETSLKKAKSLRNEWIGA