Scaffold Ga0315901_10125861

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10125861
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2327
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F005558	Metagenome	396	Y
F014590	Metagenome	261	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_101258611	F031792	N/A	VLVIVASVEESELMGYEPELNDPVFYAGDYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTAWCVVCLPNEEDSNE
Ga0315901_101258612	F005558	AGGAGG	MSEDVVMSWSELAELTHAIQVERFNFCTCEVDEYRPYDDCPKEEANE
Ga0315901_101258614	F001477	AGGAGG	VSNVYTIHPPKSDLILFYEVTTPEGEKEWGGTSVIEALKWFESAPAGSRLLISAWDSDEEDAHLVGQTIDVTALIKEAKK
Ga0315901_101258615	F044984	GGAGG	MTDEATRRTRTATRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKTWISIDGTTVLSLGVHTRATGADDLAHTGDASQNEGYNGGEA
Ga0315901_101258616	F014590	GGAGG	VKTRHLQLVTSTHSVTTTIRSSVPSPYGPVRAGLTTSQTTQDQQLTELLNSLENVVASLNYKSFEVYDTLNTAIEAVSAALKDTQIGEAGTDVNGR