Scaffold Ga0315901_10087785

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10087785
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2909
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009805	Metagenome / Metatranscriptome	312	Y
F020160	Metagenome	225	Y
F033011	Metagenome	178	Y
F053232	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_100877852	F009805	N/A	MDITVGMGEWINSLMSRMMNAADGDCFYLPTLMHLHAFQLVKDTSFPERIFKVEVEEKSK
Ga0315901_100877853	F020160	N/A	MAYNPQGLMECRKRLAWTIACEQAVVTKEDACLLYNKLMKEFESIDKRRAYKEESNES
Ga0315901_100877857	F053232	AGTAG	MNKFLLGIQGYISCLAWVFPALWEWILEQSPDLRFWRWHTNWDDHLWYAERVNGRLAMLALTFLFIWCATHGLKLNAFLFGF
Ga0315901_100877858	F033011	N/A	MGSNLTRFYLDFDEECRTGCVASLAFEDVETIEADGYEATLKEKDISYLRVDL