Scaffold Ga0315901_10082801

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10082801
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3014
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025233	Metagenome / Metatranscriptome	202	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_100828011	F025233	AGG	VRVLFINPKLFTMHLVIANLMFVLQLHSGVIIPTGDVDGRATYSIPAAGIEYAYKAEIIQYLETGKFDYDEDLND
Ga0315901_100828016	F098924	N/A	MNVLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKEELVKLALISYKNENLFTSACKLVVAQCTHINEVVFVMTVLTKIREVESNPLSLLLGNFDRGE
Ga0315901_100828017	F096905	AGG	VESKVFTSVIGFNFELDLVDNDGELIKTGAKKVKNYLPSETPSVGTKIGGENWFTNFNEPLLSKIRDYRRLND
Ga0315901_100828018	F049561	AGGAGG	MTKIKLELEETDLFNAIKKIIDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKKLGLLNISGHATAIVKEFKGFHDYTTYIVNFMNVDENNKTFEDTGFIAYNQVESIIEEL