NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315901_10072621

Scaffold Ga0315901_10072621


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10072621 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3266
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054788Metagenome / Metatranscriptome139Y
F077196Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0315901_100726214F054788N/AVAVTKAQLIALTRETMDAVSSDRWSDATITTVLNSVYGDEWSNILNAQPYYTFAKRTVSTDGDGMVPFSALSTGGGDTQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQVLPVASGTTLYVYVNYKPTPFNQLATDNSVIDFPDGGELILANEAGAMLLNKGGAESGAARVLREEAKLSRAMLLDDLRRYTIQPTMMAYPDQKYEWGGA
Ga0315901_100726215F077196GGTGGMARERLADAQPRMDGGLNSVSDDISLQPNQLRQTVNMRLTDYGAASKRGGTQRTSTAVLAAASVLNGYTFQQDSGTNQILAVCNTDLFTTTYGAFPWTYTNQGGTFSSTVAPDFAQFRDAGGLDVVYIADGGLLKKWTGTAGTSNLTGITNTVAVDTIQVHNQRLWGCGNSTYPDSIFYSSLNNGDDLGYSVAPAGGGQI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.