Scaffold Ga0315901_10038750

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10038750
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4778
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013299	Metagenome / Metatranscriptome	272	Y
F024311	Metagenome / Metatranscriptome	206	Y
F070098	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_1003875012	F024311	N/A	MTDKYTALGGNLFGFELFEEVFKVINERGYLNDEQMFKAGVASAEAAVRRLREEYYEAISKASNE
Ga0315901_1003875014	F013299	N/A	MTGKKHQKPKEFIVMNSQLEYFSGLMYGGELVWCSDYNEAKPLDDEAKFRTLQSLCRGEELILDYIT
Ga0315901_100387503	F070098	N/A	MEIKDILSELIQVATNQLGERGNPENFDLEDFISTLEDYYSELDEIGEFYYLDDENEGYSFDEDDY