Scaffold Ga0315901_10002388

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10002388
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25795
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_1000238812	F010682	GGAG	MVYTPQTNWKYDKNLYHPIQSGPQRTGDDLDLTDTYLVVSSGFVTPLGFTQTWYGVSDQGADFGRIPVGPPNLSGYFTTEWKAVPPAVSGYWTNYENTLPHASGLLDTYVGFRAQGLYSTANATVQTAFGPRPGLRNFGTHTWYGEQIPDNQLYSPFQTPASNDNTIEGGGITGGGVTHPTNQSPTLTNPTNDTSGSRAAWVYHYPIYCQSLTETRYTGVPGQMGSPARNSYRGKSLRYAPNYGSVYGVLGEGVRNMVRTFSPSTKI
Ga0315901_100023885	F077254	AGG	MNMQAADAQRQANAPSSNAFAQILNDEETDYTYSPTPQAPAPPDDQYTGMEPDGGSVLEQTNGNSLMRAKHKVAKYLQERD