Scaffold Ga0307479_10360208

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10360208
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F002523	Metagenome / Metatranscriptome	552	Y
F016609	Metagenome / Metatranscriptome	246	Y
F027041	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_103602081	F002523	AGCAG	MLVIISLSRLDNDRIEIGVARPQHDSNPTHNYPSEKEVRAVMLHLGISEDAIDFYLKLLAKMGVHERLRFPPMDIPQNAL
Ga0307479_103602082	F027041	AGGAG	MYRLPRNYYQIYRVDHKRNREQMVDEVEGLHEAEKLIEKYLRNMTASEVRDEISYYRSTLSSRVPKMFGLSRAS
Ga0307479_103602083	F016609	GGAGG	MTEYKWHEVYEAALLETDWSKMEERINAAEAALHARKHEFDLNHGGEPEENRAIEGAFRGLSVLREDAARWREKRAS
Ga0307479_103602084	F001356	AGG	MAKLKATPPTDLRYRQVRVDALNKGRRGKHHDLVAGILQELEPLSPGSAMEVPLADVGGIGLANLRSAVHRAATSRGLQIETLADEKNFYVWKKK