NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10160074

Scaffold Ga0307479_10160074


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10160074 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2210
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F004349Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_101600742F004186N/AMVSGCGVPTLGPTPSAKEVLAKPQQSSLKDAHFMVTGKISDNGVTLKLVGEGTLVYKPKPQGHFKFQTTVGGQTVTIEEISLDGTNYGHTPSSPKWVATKRSSGFDPNAFAGASDQKYIGEENLPQGKAWHASAKDKDGNPFDAYVRESDGYPIKYVETQAAGQNITLTFDRYNAGDTVTAPPPDQIQSG
Ga0307479_101600743F004003N/AMSRLVTALLAALLLAACGGPGAPLGPPSARDILSKPNHTNLKDAHFLVTGTFASQGISVNLKGDGELVYQAPGAGRFRFQTVVAGQTVSFEEISIGGSDYTLTQPGSGKWVSKPSTSPLGPTSFSGVSDFKYVGEENLPAGKSWHARAKDKDGNAFDGWIRESDGYPLKYTLTQQNNALTLTFDKFNTGAKISAPPASQVVHG
Ga0307479_101600744F004349AGGCGGMCPVKGLVCFMLAAPALLAACGNSGTAAPPSAQEILDKPNQANVRDAHFTLVAHLSSGGIAFDATGDGIIVIKPAEASAFTMQTTVGGQTLKFEEIIVGGKEYDLSPDNPRWTVKSSTSSNPGSFKGTHAVYLGEETFNAGKAWHVKATDDNGNPFGAWVRESDGYPLKYASSSQGTTFTASFDRFNTGATVTAPPASDVQP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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