Scaffold Ga0307479

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10064450 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031962 Open in IMG/M

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3533
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3533

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F099605	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_100644503	F000781	GGA	MLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPTPIASISVQASNGWFDISITDPSDARPGLFYFAESDTTTAFGAPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGAPPIAVAGGGSAGPAPLPSSGSGVFPNGVPRGGNGFGINPGSRIVRQTLL
Ga0307479_100644504	F000703	N/A	MFIREYSEGDLNALRAIHAAQGFDYKLPDLSNPLFVTKLVLTDGNAAAQKENRQLEAGATRGNEPKGNCPIRGAAFLRLTAEAYLLLDPRAGTPRDRWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAERFGKRITRLGWLRDDSWTPFCHKLAAPQQR
Ga0307479_100644505	F099605	AGGAG	MPTTNNAASWDFNPNDPVNLSASFIFDTEDTQDSAPVAAALAAIQSRLSHATLTATQPDAATISITVTI
Ga0307479_100644506	F002853	GGAGG	MSRAQDFTRQLTDQQLASLNSLNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGMDSNLLGRTLGIPAELLNVRANASRGTGGGFFSALGSGLGSTVGALPGAFL
Ga0307479_100644507	F000624	AGGA	MPIHWFGVLAAVASAGVQFVLFLRWLHRRMRNDEIVSVFVRDIAAIHLPHIYTALHEIGKRQGIELPETPMVRFVDLNGHRRRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307479_10064450

Overview

Ecosystem & Geography

Associated Families

Sequences