Scaffold Ga0307479

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10022481 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031962 Open in IMG/M

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5966
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5966

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_100224815	F004186	N/A	LTGILVAGCGVPTLGPPPTAKQVLAKPQQSNLKDAHFNVTGTISDNGVSLKLVGDGALVYKPKPEGRFKFQTTVGGKVVTIEEISLNGTNYGLTPSSPKWVATKSTTGIDPTAFAGASNQKYVGEENLPQGKAWHASAKDKDGNAFEAYIRESDGYPIKYVETQTGGQNITLTFDRYNAGETITAPPADQIQSG
Ga0307479_100224816	F004003	N/A	MSRLVAAILAAGLLAACGGPGTPSGPPSAKDILSKPNHANLKDAHFLVSGKFSNQNLTVDLKGDGELVYTSPGAGRFKFTTMVAGQTVSYEEISIGGTDYTFSQPGNGKWVSKASTSPLGPTSFSGASDFKYVGEENLAAGKAWHAKAKDKDGNPFDGWIRESDGYPLKYTLTQQSNALTLTFDKFNTGVVIKAPPSSQVGQG
Ga0307479_100224817	F004349	N/A	MCPVKRRIWLVLAAALTTACSSASTPSGPPSAQDILNKPNQANVRDAHFSLVAHVTSGGIAFDATGDGIIVIKPTQASEFTMATTVSGQNLKFEEIIIGGKEYDLFPDNPHWTVKSSTSSNPGSFKGRNAVYLGEDMLSAGKAWHVKATADNGDPFEAWVRESDGYPLKYTSASQGTSFTASFDRFNTGQTVTAPPASDIQP
Ga0307479_100224818	F006952	GAG	VAGPLATANREIREAERLDERRQLARLAEPRRLTDRLLSQLEELNLEGLERVPERYEPILAELRAHLVGQRGVGKRLIERLQAGTSTTELIDTVFAIQEVISPPTLPPGALPLEGSEDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307479_10022481

Overview

Ecosystem & Geography

Associated Families

Sequences