Scaffold Ga0307479_10016599

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10016599
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6922
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F001367	Metagenome / Metatranscriptome	713	Y
F013395	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1001659910	F001367	GAGG	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVAQVDTSLQVSITDATAPPNQLPTDLLVPVKIWERS
Ga0307479_100165997	F013395	GGAG	LFGGAIAARGKTEPLLFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRQVAPGTVLTCEMVAREHDAVVEGRVGKVSEMVLNCGEHEFVVKTIDFSPQRH
Ga0307479_100165998	F000512	GAG	MRSAIQSRSGSCPAQRGLRSASSRVTGHGSRVTILRPGRGPRITILRETHGVPEGVARSLELAGGINRFREPNYRAVWGWNRLAWIGGKFTERDPATGALLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTIEIEAGRSVPALGPYPSRGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIERSRRHPRSAGKRALYDREQRHECAYDAYAYDILDDAVPAFHRQPFVTVA