Scaffold Ga0307479_10010386

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10010386
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8647
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005385	Metagenome / Metatranscriptome	402	Y
F006213	Metagenome / Metatranscriptome	378	N
F007968	Metagenome / Metatranscriptome	341	N
F013177	Metagenome	273	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_100103863	F013177	AGGA	MSLDYPASRIFFNILGGSLTLLSIQLPWMTIYGMYPVSVQSYGVYSVALFWALAGAILSFLSRYGGAMTLVGIIAFVGEPYASLGSARPGLGILIALFGAVFTFAGVRWAIPRSFMRRQEIVGGVLYSVGFLIILTLIISSGIYGGLLSSGAAQLIISAPLLLIGIFMTGLGLKLFLSPERREHGLGVLANTA
Ga0307479_100103866	F005385	GAG	MESRKRRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFSEIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWVDSAYKFEGKPVILVYNAS
Ga0307479_100103867	F007968	GAGG	MRYILTVDFEDDVDIESFMHFVAYHSKRLKCASKDVFIRLAHEWEKQLVNPHESTNPNGVKKEKKKTLKETNE
Ga0307479_100103868	F006213	GGAG	MPHTIKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMYLVIGSGNITYHPKQIEEKKSLLQRLFSKKQQPLLEDKGMAS