Scaffold Ga0307479_10008582

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10008582
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9453
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000432	Metagenome / Metatranscriptome	1148	Y
F044521	Metagenome	154	Y
F048453	Metagenome / Metatranscriptome	148	Y
F063422	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000858210	F048453	N/A	MGPLATGFVLALSSVFAVQTVGAVSEGSLHPSWSDSAMAEGWRAVCGDVRNVGQVPARSVAIRVQGLGSTGQVVSTRDHYVLADVPAGSRSVFCVPMPAGATSYNVTVLRADWGFVEAP
Ga0307479_1000858213	F000432	GGAG	MPDEPRLREQAREAIQSGKLPSRAPDRMWGGPGVGADCAVCGLPVTREQLEFEIEFARNGDNPGLDQFHVRLRCFAAWELERNKPPRV
Ga0307479_100085822	F044521	AGGAG	LEPGLGSGTWWDEAEYRQLGTVNDRALFILGKLIKRDTPKFQAAWAVAFPGRLVYEPRQLQPEEVTRGPWLVILTRMGATREATTDILERVGRRW
Ga0307479_100085823	F063422	N/A	MRPTKPTWADGAVMPLNLDAWWNEPEYKVCGTFRTRGYFILRKLHELDPARVLAVTAKLYREEEKEPQDISKGEWKVILEHLGASPKEVKDVQVKMGKWQ