Scaffold Ga0307479_10008444

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10008444
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9523
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002025	Metagenome / Metatranscriptome	603	Y
F008865	Metagenome / Metatranscriptome	326	Y
F063394	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_100084444	F008865	AGGA	MLLKSRSDPVETFLYACQELGCFVCYGSSQGYFINEQDADATEPEIIPRVSCRNDGHLMYLAEVRPEKRSFRLWKCPECNAIRTNDELSSTAVSSG
Ga0307479_100084445	F063394	AGGA	VTGKGQFEWRNTIAPLLGDWVALLAMKHRRAPLPVSPALWKGLLRKGFPNDLDELGVFACRYLFLGDARMLLAELKGRPGTASAVRMALPKYSEVEPEGHL
Ga0307479_100084446	F002025	AGGGGG	MNNQILKFVTQARASFLLGIPEAELSRISKESGLGHIERAGKEEETYFTYEELQQVCMLATHQTHAVH