NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10004754

Scaffold Ga0307479_10004754


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10004754 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12468
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007854Metagenome / Metatranscriptome343Y
F052529Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0307479_1000475412F052529GAGGMRQIAGFALVFVLVGTGGNLCFAQSKPMAAMKQPGGIQPSSAVETGVVPLTYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKSDPHYAIIKQIEAPAAKSKTPVETNMLVYMASGRVVNITLKAGKLEDTSYSIDYFVPTAKPKDDPPPVSKEELEKRRRDQERSELAEEMIAEVKDHPKSQPGVVAGGLDLRFYSTKRLGALALVSFDVENTSSGTVDLEDPQVNLTTASNNPKDRKKPLVKTEPVEITQSVVSSKQLSPGTHAVCLVAFKPPIHDTDQQVVLSISNRAMADKPATYRLE
Ga0307479_100047544F007854GGAGMNTLIANQYGRVQGEAGGCGLTLCVTAQTPRRESVELQTHVDSVEQQLHLLAILRAVERRIEQFQLRDGKAGESADQQSPFDETVCGEEDLFRSNGSPSKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASSHGLRFSVQSPLWRSEFVISKANDLATLAVFTRRAINQEKTIPIKFGVEVNQLSLRRRNDGQVLAEFEHDGAMERIALSTLQLYELEILTQFALHRAFEPSSFAAGNPLPPETATAA
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Institute for Fundamental Biomedical Research
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