NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10002670

Scaffold Ga0307479_10002670


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10002670 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16186
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033387Metagenome / Metatranscriptome177Y
F039313Metagenome / Metatranscriptome164Y
F054328Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_1000267011F039313AGGAGMWIAKGTLLALWLFGFGTMGWLYIAVYRNLRPNTAVSVSVIASRTTMNPFWWTALVVCLVLGYAIARSWSGPLGLWIALLVTGLIPAGWLALFLVLV
Ga0307479_1000267016F033387GGAGGVLRKMTFLAGFLWILIPTTPACAQDQPSLGEVARQARKDKEKNNTQPKKVITDDTLPSSKGLSGVALADLSASQGSDDGSGMARALAGLKQAEAALDKMGPMDRATLAKAALLDNDVDFPNRRGWEDKLYSAKEQYVSHGRELFQEMRQILVDVQSLRSSQGGPGKLSPDDPRAQQMMRRIQEIVQDAVRTDRAYQTIVVEGWDLAKQAKH
Ga0307479_100026702F054328AGGTGGMVRQIILAGFLIILPAGAQAQRHGMMAPVSRPVAAGPRAAMQAPRAGSAPVMSGPRTGMRGRPVRPRTAAPGVRSARQQGTTQRRFDNQDFGRRRGCNSAPGLGFDAVHQAAICGSGAEGFRDRGLGSSFFFPFFDGGFSVPDSEAAVDEGSTAEQPPQPEATDAEVRDRGRQNRAAEPVTAPPPPLATATSAPADDDGYVFVRRDGTVFFAVAYSWEKGTLRYITSQGLRRTVTQDALDLDATRQFNEQRGLNFRSPA
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