Scaffold Ga0307479_10002384

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10002384
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17069
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008325	Metagenome / Metatranscriptome	335	Y
F035564	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000238410	F035564	GGAGG	MDDSEFLKLLTHIHDEMLELVKEQYPSHEQFAAWMLGQIEGRLRMRIGTVKTT
Ga0307479_1000238420	F008325	GAGG	MIKRPALSMALALGATLLMAVSAAASSTYTEWIHGSELPNATTTEGQFVGEATGSFDGTWYIDVRHQDLSHHPAYITGGSFQLDTFINGWPSAIKGSFVGGTVSQTSGFSGCTNQRFSVQGMLAGVGVNGGTGSGTFRATLTHYRAYVWFVGCVVYAASVSGTVALTF