Scaffold Ga0307479_10000922

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000922
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26486
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000092213	F003631	N/A	MELLLNLAWLLLVLPAYWLWRRGAAVRAMRKVSALHCLLSLGCAVVLLFPVISATDDLHAMRAEMEESATSKRAVRQAATGKNSTWVNRLQGPLASAASVVRLPGPEAGLLEVSVTRLALLARPCNLHTGRAPPSSLLG
Ga0307479_1000092214	F004157	GAGG	MTSLRGCVPTGALVMLMVTSALGQAGAGQKNAPATGTMPATAQDKNQDKENGLVIWPLKLPGTYPHGTYQVNLQGGGNYVPVLQWRLESGVLPPRIKLEENGLLHGEAERAGEFQFVVSVKDGGKPQQAVQKEFVINVVEGILVAWKNPAHVTGSRIEGSVEVSNSTADDVDLTFDVKAVAEDGRATEIGYQHFPLKRGTMGMALPFGESLPHGAYLVNVNVVGEVAKRNAIYRQEMQTPAPLQVVVGP
Ga0307479_100009228	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSDMIKPPLAQAVNGPQAPLRIPSPPVVAAAQPVRAAGWDDTAKRWP