Scaffold Ga0307479_10000905

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000905
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26757
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001727	Metagenome / Metatranscriptome	645	Y
F006427	Metagenome / Metatranscriptome	373	Y
F024281	Metagenome	206	Y
F033129	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000090517	F024281	GGTGG	MSQLLPYLGVALLLLVVSALWARQIFLTRKSRIEVVVPRKHQAAGRSSASRQALGERIFGLHDWDFVSRNMPSEIQKMFLRERTVLAISWLRRTRTRISLVMRAHVASVGQIADLHLATELKLALSYLVFLILCDLLIAWIWLRGPIRTRRTVGQTLRTVTWLRGAFEQLMARVDSANCIALKTNFDHRGVGS
Ga0307479_1000090521	F001727	GAGG	MAGGVRPNSSFRISPVDRLGRSISPFVLDVAEQIGRRAIQHAENLLIDPAVATTLMEEAAAAVSRAIDRKKHGDQRPVRDLRAYLFRAFIRRVNKAKKRQLMVADAVRLFSATSANSTDPLAELELKILVDELLTAGDPVSRDMFYRRSQDFSWRDIGSSYGISGHAAESRFSQAIRRLAKRLGLKPDS
Ga0307479_1000090522	F006427	GAG	MKDRRAFEKKERVLLDFARSYLSEGFPNPDREGCPPDDALRSLAFNPRESDLQVTEHLAACSPCFRRYGELLAKLKSQREAEKRFSSRRISAWTKVHPVLAGTAAFCALLIAIGAGLLFRRNRLPNTPPVGTHRTPASVEPLNSAVAYAPFGLDLSALSRVRGSESSATVPQRLAVPSSPLDLTLTLPLASKEGHYDLRVTSGDRIFWSKSAQAHLLKGKTLIQVEADFRQIQTGDYNLEVESSAGTRLIQPVLIAPGLPHNEKPE
Ga0307479_1000090528	F033129	AGG	MSDRWEHTTDGYSFRFFSPEQIDRILREGVKRGRTGSHDAIDRILKHEPGLGRAELWRRIRRLKQPLSLKYYKRTAWSPEDDQILRKGYEEGWKGKREAVHELLRRHPGWRPHSIWGRASKLGLVRKTPQKIRQRSRQLWTEDDDRILLSMAGYKTAEFIAKALHRSENAVRYRLAVLGKSSRVHLEGYARRTLAKELHLGCRTIQRLIVQGLFDARDPRITRKSLEDACRTGRLAPSLRDQLPDAKESAAIPLEEGPAATPSTNAMPVAPGGASKPPRSCRAKRIWADVARQLNVDASAIEQLILRGLLKLYDPRVTEKSLTRFCARYGALIKSDFLDAETRDWLAGSMELAPGAGKDIAHGIEIFRKHARVVRTCERCGRAIRGNAFFRHAKTCVESYPKPGLEDTGRLVNK