Scaffold Ga0307479

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10000297 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031962 Open in IMG/M

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46658
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

46658

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016649	Metagenome / Metatranscriptome	245	Y
F018762	Metagenome	233	Y
F085449	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000029714	F085449	AGGA	MATGASPSSYRLNSVDRHGKQIDPAVLAAAESVFPKALEYGTNLLGDSAVVTNTLEEVAATVSQLIARRDPPGEPASIRNLPGYVFRAFVRQVNRLKSKELAVLDAAIAGQTLAQRLADPSRQLEMKVLVKECLAQFDFTERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKAKLARSRKPLPPTAQTAQNEQLMPALEADDDKRKT
Ga0307479_1000029715	F016649	GGGGG	MRDKPLSLVLIVLAFAIFSLAGCVLRHDIAGVWKGTIQASAAGGKEKWQGSAELTLNQNGDALTGTLVFTHPQAGRVQVPISSGIVSKDAVTFSGQSQFPLGGSIEITFHGKVNGTSLAGTTDMTSRGLFGTVTNSGPLSLTKQ
Ga0307479_100002973	F018762	AGGA	MRQHSRRFVVLSLATAIGLLVPVTAHAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGMYLQQYNRINAGVQEGVSLARGRQLRGILNRVVGSQFPQFQQLQRDFNGVLVDPSTLRGDLELAYGATPSADFPIGRKKRIDAADATATLGLLEASRAELVSQQEELDADDIESRAGVASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARENSIEKEQEQIREGQVTAVSDLVGSMKLSYGLGDFRRQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307479_10000297

Overview

Ecosystem & Geography

Associated Families

Sequences