Scaffold Ga0307479_10000280

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000280
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48050
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006166	Metagenome / Metatranscriptome	380	Y
F013198	Metagenome / Metatranscriptome	273	Y
F069759	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000028040	F006166	GGAGG	VTPKEDGQIEPSQLLKTTYDSGVSVAEMDMTVSGKIVKDSSAGLALQVKPNQSFVIAPNELSKGLESLDSSTVTVRGQLYKKPAGKQKKADASAPLKLLILEVKKE
Ga0307479_100002806	F069759	GGA	MRTARRKVARKDRFGTNGFCLFCNYACLESLTTVTRRWLETKGVPAELIDRLLEQHHIHGEAHNPNLTVTLCLNCHREITEGLMREGVSMYPEKNVHKLIALKLRASAVLLESLASSYRDSAGLLEESDEP
Ga0307479_100002807	F013198	GAGG	MKKRALRKRRRHGGNSRSLVNRKLTQPSEFARDRALHVLAAMRRDPNLSLSHAAKLEGVKPETVKKHFSSSLRKIAGKFTVTKSDRYAATLYVPDAHGNPIPLTTRSSKERREASNYLRDLGRYLRGQKNALAGWHGKKIAGVELVTAGRTVVAIEPVLPEFSLYRTLNGGAA