Scaffold Ga0307479_10000126

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000126
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73413
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (79.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F001772	Metagenome / Metatranscriptome	637	Y
F004142	Metagenome / Metatranscriptome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000012637	F001772	AGGTGG	MRKRILPVSACALLTVAGYLVGSRNTTVAYAAPQSQSGDAYDGVLTKGTVPKSYGRIAAVIPDKIGTGLIFEDAEGVIRFVSMTGMKEGELARYDQTPTHGGIPKAYGHLVGAVVNPKGTGLIFEDSAGVIRFVTITGKEEGELIRN
Ga0307479_1000012655	F000138	GAG	MPVPWMNSFHISFTTLVTYVPLIATVLTCFFSVILARATLRYVEATDKGLALAREEFEREWTPDLHVKLERISATEARIIVTNLAKSSVLLQLLQLRKLSHAVPFERCRLNDPLVGGMTWSQEMGRRILACTEKDFEGPIAAAMTFYCAGRMFRTDWFRSQIKVSDGRIVSLEPSNMPARRVRVVEHKGPERRREFVQDVTSGAAQHKPDQKPDEKFLVTGA
Ga0307479_1000012676	F004142	GAG	VVFGPDGIWSRFLRQGEGYIATEVKCESVSDGRYRVRDFWSGHRGFEIFRERFAEFSGRLDRMIAEELVERQEFVGAYYEADGDDLVPA