Scaffold Ga0307479_10000003

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000003
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 509360
• Total Scaffold Genes: 453
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 324 (71.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001318	Metagenome / Metatranscriptome	724	Y
F001431	Metagenome / Metatranscriptome	696	Y
F001765	Metagenome / Metatranscriptome	639	Y
F005420	Metagenome / Metatranscriptome	401	Y
F008269	Metagenome / Metatranscriptome	336	Y
F011536	Metagenome / Metatranscriptome	290	Y
F012141	Metagenome / Metatranscriptome	283	Y
F019706	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_10000003137	F011536	GAGG	VASLKSRLIMSCCLIVSVWMAPTTGQTAAEIARPETEREILSSQEFHCHTGYSLAQCQKDILALKKVLAHYPIEGLGHWTWVLVRSQDWKPISHMLRLNPDSPAFTALELRETFLEEALFLHDPERTAELMEEWQRSMPKLLELAVTHELGHAFCEETNEAAADHFGEELRSGRLMGCRISTEPRRKRVGTAGLHGLNANALRASER
Ga0307479_10000003140	F008269	GAGG	MRAHDDRLEPCRRTSRFHRSLTRAARVLLVVFLVLAGVSRSHAADSATITFSLDFPSSDPEHYTISVSADGHAHYECSAKISADSDDRETYQSEFTFTDATRARIFDLAAQAHYFSGKVDSGNRKLAFTGAKKLIFADGQHSNTAEYNYSSVVPVQDLTALFQRVATTLDFGRRLTFAHRYQKLALDEQLKNMEDSARRGELTELQAIKPVLQQIYDDTSVLNVVRARAQRLMEMGKGSSSGS
Ga0307479_10000003145	F012141	GGAG	MNRYWVAIGVRLLIGVAIVAWAASYLGTGSGEKEFKKTLDAMKQVRTFRVAFTANPAAGMHNEMLWEVDCSRNLVHHQAHLVSTSADSAHDISEDQLSVGGQEYSRQPDGSWGPVKHAYGLGSAKLFCSNLTQGTDTNLLPSIATMIKRGIIQKGDKKTVNGVRCREWLVTMRGGLRGLEHDTVCLGLEDHLPYEMTVDWENSRSSFSDYNTPIQFDVPEAAVQSASSTTSN
Ga0307479_10000003173	F019706	N/A	MNTPLMALLSTNVAGAVKKNRVLLVDTSAHKRSVRAEVMRKLGMDVDCAADIGEARSWWRADLYDLVLVNMEKGEGHRDQFCEDVRSASPLQRLAFLVGKPEYLANSPNVDEVLPVRNGHDGGVAADVKAALSADVGGLSQRWGILEASRRISAVRSACSARTQAMRALPSPPRDSEGRGSKRIPTVTSLDDLLRKELQ
Ga0307479_10000003183	F001318	GGAGG	MKVRTWVLAISILISAVAAGQSTATLSAGSSSQGSGYNADSSDRMFFPRDTFWGWAQLDLAPPHNEIDPNLCSGNVAQNGGINDQCSMFARYMLSGILEVRPFGQTVLRRFMVFGAPTFLFGKTLPKTLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARDKNLGSADLGNNGPWGRYVSLGVRKTFGTRRW
Ga0307479_10000003200	F001431	AGG	MWSIEDVSAEELARLFHHYRGALAHDFDCSNQEAASAWDRTPQQERKLMVAAARLALLELATSSAHRDESRPYFAQPGEAEWGC
Ga0307479_10000003225	F001765	N/A	MMKEMPYISEHLSSLRQEIAALRNSNALVTKNGRHNEHDQTALELRTMRLREIKDELSRMLSHPDDPKVWWERFRKTNVA
Ga0307479_1000000346	F005420	GGTGG	MKYSVVPILILVAVATAQSPSSTIYAESFRKSSTHITEDKFEARLTPANSAYRERIKDSAGNDRYELTIMPQGPVGDNKITSWRVQLRDLRHTIYNNLLLEDQEPSQDPKNNLWWLNPNQMGSVPIRARRIVKVDSFYVVFQVKDIHFTPLDSPYLDSMMVQFELTNNDPRSGR