Scaffold Ga0307479_10000002

Overview

Basic Information

• Taxon OID: 3300031962
• Scaffold ID: Ga0307479_10000002
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 580714
• Total Scaffold Genes: 547
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 379 (69.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F000269	Metagenome / Metatranscriptome	1410	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F000900	Metagenome / Metatranscriptome	845	Y
F022484	Metagenome / Metatranscriptome	214	Y
F095374	Metagenome / Metatranscriptome	105	Y
F099609	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_10000002125	F000269	GGAG	MRTQMTIRSNFATLALIPLLAAMGLASEPAAPKPTDVPATVIAHLPLPQTTGSQMLLQKENGKEYLYVQQSSKQGFMVVDVTKPDKPNLLKRTAQSDQATSGNLEMLSPDVAIAQAPEKTSNTLTSNPRVTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHALIYLTNDEGLWILRYNHPSLLEPAKKKRPCDSESEIAAMPPDCD
Ga0307479_10000002223	F099609	GGAGG	MHFLLATTLLVLSAALALAQNQSHVQDQTQSMAKLCAPASIITASHDVEVIVQRVMLSGKWGHNEATVYLPDKEIADGAILFSHSAIHTDSGAAVDLLPFALTLAHAGAAVIVPERTLIWPPTERSMNREGAVVICAEHWLIDHTKVFNNGEALLKMVNDKNVVVREGYAYVGPRLCDPTVPSDCEFMDPFISEDCALKHYCCVSAMSASVGEIEGGDNTRGILSDGGLWMAQRLQKVLGLAPIKALVVAPSSSGS
Ga0307479_10000002246	F000238	GGA	MGHWTQQSLRMKKQRMTSVIASRSPRWYGIPVRVLLVTFIGTLLCFAVSLLLGILGTVIGAALRGVHPDMRMAYRAIAIPMALVAGGIVFVSVLVMEIRHYRQAKTLAAIEKLG
Ga0307479_10000002339	F095374	GGAGG	MSNQALHAALFLLFLSGFLFSQSAPQTAPLPYDPLELATGPTLVPNTPEQRATILNLLERTRQNSAMHIPGTAPFDIKVSFNSVGDSHTTGYGEVEETWLNGQTWRWSARIGDYSQLRIFYQGAAYDDKPRGHMPMRLQMVRNSVFWPVVGNFAPTLMRMATAKWEGTDVACILISGAVNDATPTPGRRWEENEYCIDPKTGLLRIHSEAPGIYSVYDYAGAIQFHGRTLPRQTTIVEGGTTVLQIHLDSIEDANNDPNQFVPTKKMISHGPGAIMVGPFRFPEFVHAPAGYSGDIRPVIVHAILDQKGKVLDAEVVGSSDPALSSAALGVVWHSSYRSTQVGDRPLQREAFINVKFTPT
Ga0307479_10000002404	F022484	AGGAG	MRLAEQVEQMAKKRRLSDNRVLVELIEQGLEAHKEKEKAFFVLTKRFQAACLAGDQNDIKRLGDEMGRFVFGE
Ga0307479_10000002407	F000348	N/A	MLGLAALARKASSLKKALLIFAAVVLAPVLVVSLAVLAASDWRSIGQTDAGDKVSVSSVHMLKRNQRVALVRVEYKEPTELPQGGPFVEMRARVRFNCSSGTATPTSEWFYSRDRSGRFVVSKKSNRDDEFGNGAEGAFADMVSKNVCGQTK
Ga0307479_10000002495	F000900	AGG	VGLGTEILFVLILGLLVLGPKQMHALLGHVVRAKAQFEEASRGFKSQLAEELAATHEDGEAEASHELAGDQ