Scaffold Ga0307272_1024169

Overview

Basic Information

• Taxon OID: 3300031960
• Scaffold ID: Ga0307272_1024169
• Source Dataset Name: Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG08 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Subsurface Water → Freshwater Rna Viral Communities From High-co2 Subsurface Aquifer At Crystal Geyser, Utah, Usa

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034815	Metagenome / Metatranscriptome	173	N
F075684	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307272_10241691	F034815	N/A	GDEVYDQFAEEKWDTLVFRLRMMLRRDLRRIVCGEKKYEIHPI
Ga0307272_10241694	F075684	N/A	MKYEFDRQMDIAPPPKTNAEQEKKAKKIDNFQEEIRKRWEEVWCLKEEIHTTTDIIYELSQIRRKYIGVAEEEQMSWVDIRWEILDGLKKSFCQ