NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318530_10104189

Scaffold Ga0318530_10104189


Overview

Basic Information
Taxon OID3300031959 Open in IMG/M
Scaffold IDGa0318530_10104189 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019070Metagenome / Metatranscriptome231Y
F029957Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0318530_101041891F029957AGGVLFTASTRSRQEIEDLAAEARRLRPDVEIFIRPPDGAAYRAATLRSDPRQLELDLEPEPGRFTGCR
Ga0318530_101041892F019070GGAGMQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETVPESARVDRAASFDEEDVGATTPDVGGTTQYDRHTSPHESARHSPGKSKGHSASAHYAK

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