Scaffold Ga0308410_1005179

Overview

Basic Information

• Taxon OID: 3300031958
• Scaffold ID: Ga0308410_1005179
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6933
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005631	Metagenome / Metatranscriptome	394	N
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F105262	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308410_10051791	F010840	AGGAGG	VNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLNETEAEAIARKYYRNK
Ga0308410_10051792	F016404	N/A	MTIEELLTDEARAAVLRALLMIVLNESDPASARVAAARLFLSQFEEHPNAERDVLVIVDEAAFVKTV
Ga0308410_10051795	F005631	GGAG	MRVSVFVDLDNALRKLLPRAARIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKGR
Ga0308410_10051798	F105262	AGGAGG	MLVQETIQPLLRYFNAAASGSDTAVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKAIATLASNSTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPGRDIPATLPSGWTRVL