Scaffold Ga0308410_1002520

Overview

Basic Information

• Taxon OID: 3300031958
• Scaffold ID: Ga0308410_1002520
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10472
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056952	Metagenome	137	N
F058499	Metagenome	135	Y
F089597	Metagenome	109	N
F096158	Metagenome	105	N
F098168	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308410_10025201	F056952	AGGAG	MKRRPSYRLYDVFGNVVYTSSSFRYTIRRLAQSLVKPIIYSAQGRRHVVFYLENGVVKYLLGNFGESRKSVEERVIRLFRASDIARRVRRHV
Ga0308410_100252012	F098168	AGGAGG	MRVRFHSDLVRDRLRAIRSIVREVVLERRIVFVETRDGKLSFSTRSGIAVGEVRFDADDTKIVIVEEGAAAFDANEFVSSIDRAAGEVVEIANGPDRDYIRFAATEYAFPKVAYSDHDRVSVSSSESSVVRFAFELEGIFARTVFASKSSVQSRSRFVLYRSDNDAGGGLIVFSTDEKRYAIVRSRVAADAEAKVLAYLDYDSAALAHSFLDATDERVEVGVDTNGWLVLSGESFRVGLATLSVPNNGHRFLDFDRKFRARVHRAATIPYESFVRAYRSIEPVVSKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESIVPANLRTTIYLDSKYVGDFLAAVRSVVSAEALELTKIVFEREEDSKGIVFFGIESDDWRYGMMAISRD
Ga0308410_10025202	F089597	AGGAGG	MPRRLSWGEVAAILDRELVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVIYDWCRRRHRHRPLPATVRAFSWVARYCYPFHPVFARLGIGSEDVVEALEWIANESYSFRFVPAKHAGVLVVGEHKEVERREVHHFAPVHLIAPDIDDRHEVPFDIRMAARYVMEAALRAICVVEDDGSYDEIAIRVTVRDLLEVAAPLVTPN
Ga0308410_10025205	F058499	AGGAG	MPSPLVRYERAYTELLSRYLIGPLAKYRDVAGLRFDAEGVFHLVVPNRHGDLVLYSCPYLDGRIVTEDRIPGRRISLRAAVNHDGWDVAVWAERILLENQFAASEITLPS
Ga0308410_10025209	F096158	GGAGG	MAEVGVHRFVIESTQFAKLERALSVALPAARSLGVDAGIFWLRDSIFAATPYASIGLANFDLELEDAPECIAISQPVARLILYELRSHRVRYLEKIGLVVAYDQVVFTFEYDRNPGVETQSFISRYLGSWRPRLKLREHYELLTAHRICFECELSIKEMRARLQGYRSKINDDAYYGYVAFKYFSNVVWHASISRSLLLAFFEAAKDEDTTFRLAYYGDQRCVVCRAGDVIAILSVID