Scaffold Ga0308410_1002327

Overview

Basic Information

• Taxon OID: 3300031958
• Scaffold ID: Ga0308410_1002327
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10922
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026459	Metagenome / Metatranscriptome	197	Y
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F040491	Metagenome / Metatranscriptome	161	N
F061873	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308410_100232713	F031690	AGGAG	MNHNHYPQNLLYCASFDAVVGTERCRLYMLVSNSEQAAKYVWPTKTRKRTRYVVSRERLAGLQYSDEIEAVAHRYGYKDTYHHICEVLEGCKSLADVLIQTNALRWALTFLPQEGTRTVSIGTKGLNIEGVPLGGCALYDAHMRVQSRPLRLMLEQMPRDVVARVSILGHRNARALKVSLGTHVHYVFDCYHGFTAFIPRGDER
Ga0308410_100232714	F029920	N/A	MISAQALERAFREERQLKGFIAPGLALSYQPREYLAIGRADCQLDDEDIALVITLAREAFIFLAREPQHEVIELNGITWHLARWSLKREYVADHLPQRKMERRDR
Ga0308410_100232717	F061873	AGGAGG	MNEKMNETMTLDDLIRRGVEIREKRIAEERARIAAFYEKLAREHTEEERAIRALLPPPLDKLSKVDVVVRHAYIYITEFPGRGKVRIYASKKDGQWNFLEYEAYNPDGYFLKLPTLEEAVAYASGALEI
Ga0308410_100232719	F026459	AGGAGG	MNKPLSQERIEALRTINAIESTIRPSANSISMLIAALTAMGSGETIRRALERLSKRAPEREIGSATELVRALYDIGEGVSALKISRLIAELKEGKTVDATYGLYALVDLLPHDAYMAFGFAVESAQARCGEHPNPQELLRDMDFDREGFRFGPAWEFWGERSPEAIRVAREAFIAHLLHAAGLGDEPEYPEPLSD
Ga0308410_10023275	F040491	AGG	MDIVQVQTFLRYIAELPEVQFIAASVLVNTALAVAASIRNDDFHLPALANFLWRHLLPYVVAYVSIRIAADELGLQAVATATWFIIEASLIGRIAASLHELGIPMPDGLAKLLKKDH